RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g12260.1 View Network Show in Genome Browser |
| Other Names | Os01g0222500 |
| Description | vacuolar ATP synthase subunit E, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 6699462-6703371 Nucleotide Length: 696 |
| Protein-coding | LOC_Os01g12260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os07g36470 LOC_Os04g55040 LOC_Os06g45120 LOC_Os05g51530 LOC_Os02g57854 LOC_Os02g07870 LOC_Os06g37180 LOC_Os01g51380 LOC_Os03g53650 LOC_Os12g42980 LOC_Os02g02890 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5150-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00680 rn00190 rn00195 |
| Metacyc Pathways | PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g12260.1 |
| Rice Genome Annotation | LOC_Os01g12260.1 |
| Ricechip | LOC_Os01g12260.1 |
| KEGG | osa:4326699 dosa:Os01t0222500-01 |
| Entrez-Gene | 4326699 |