RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g13350.1 View Network Show in Genome Browser |
| Other Names | Os01g0234800 |
| Description | 25.3 kDa vesicle transport protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 7437788-7443252 Nucleotide Length: 441 |
| Protein-coding | LOC_Os01g13350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g13340 LOC_Os01g07730 LOC_Os01g08450 |
| Downstream Genes | LOC_Os01g64650 LOC_Os03g42320 LOC_Os07g10150 LOC_Os04g52460 LOC_Os03g58840 LOC_Os03g06960 LOC_Os03g12590 LOC_Os07g09600 LOC_Os12g05810 LOC_Os04g44810 LOC_Os01g73300 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2926 osa-miR3979-3p osa-miR2923 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g13350.1 |
| Rice Genome Annotation | LOC_Os01g13350.1 |
| Ricechip | LOC_Os01g13350.1 |
| KEGG | osa:9270655 dosa:Os01t0234800-01 |
| Entrez-Gene | 9270655 |