RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g16870.3 View Network Show in Genome Browser |
| Other Names | Os01g0275600 |
| Description | argonaute, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 9631296-9638874 Nucleotide Length: 2715 |
| Protein-coding | LOC_Os01g16870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os07g43316 LOC_Os08g40830 LOC_Os12g02390 LOC_Os03g27950 LOC_Os03g42900 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5544 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g16870.3 |
| Rice Genome Annotation | LOC_Os01g16870.3 |
| Ricechip | LOC_Os01g16870.3 |
| KEGG | osa:4324438 dosa:Os01t0275600-01 |
| Entrez-Gene | 4324438 |