RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g16930.1 View Network Show in Genome Browser |
| Other Names | Os01g0276400 |
| Description | presenilin, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 9682566-9684170 Nucleotide Length: 1311 |
| Protein-coding | LOC_Os01g16930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os02g50360 LOC_Os01g72960 LOC_Os02g17280 LOC_Os03g15350 LOC_Os10g25360 LOC_Os11g24540 LOC_Os06g51430 LOC_Os04g38620 LOC_Os05g36070 LOC_Os02g36710 LOC_Os10g39620 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b osa-miR5819 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn01100 rn01120 |
| Metacyc Pathways | PWY-702 HOMOSER-THRESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g16930.1 |
| Rice Genome Annotation | LOC_Os01g16930.1 |
| Ricechip | LOC_Os01g16930.1 |
| KEGG | osa:4324260 dosa:Os01t0276400-01 |
| Entrez-Gene | 4324260 |