RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g17170.1 View Network Show in Genome Browser |
| Other Names | Os01g0279100 |
| Description | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 9874326-9876951 Nucleotide Length: 1227 |
| Protein-coding | LOC_Os01g17170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g04730 |
| Downstream Genes | LOC_Os07g43700 LOC_Os10g41780 LOC_Os11g03390 LOC_Os11g26850 LOC_Os07g32880 LOC_Os06g44880 LOC_Os01g37820 LOC_Os02g49870 LOC_Os12g03070 LOC_Os04g38600 LOC_Os07g37030 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1427 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g17170.1 |
| Rice Genome Annotation | LOC_Os01g17170.1 |
| Ricechip | LOC_Os01g17170.1 |
| KEGG | osa:4326901 dosa:Os01t0279100-01 |
| Entrez-Gene | 4326901 |