RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g18320.1 View Network Show in Genome Browser |
| Other Names | Os01g0286600 |
| Description | protoporphyrinogen oxidase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 10291889-10295536 Nucleotide Length: 1611 |
| Protein-coding | LOC_Os01g18320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os02g51880 LOC_Os07g43370 LOC_Os04g53190 LOC_Os03g08570 LOC_Os09g20284 LOC_Os04g57560 LOC_Os03g08410 LOC_Os01g51320 LOC_Os08g04780 LOC_Os04g47270 LOC_Os04g52130 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN HEMEBIOSYNTHESISII |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g18320.1 |
| Rice Genome Annotation | LOC_Os01g18320.1 |
| Ricechip | LOC_Os01g18320.1 |
| KEGG | osa:4327918 dosa:Os01t0286600-01 |
| Entrez-Gene | 4327918 |