RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os01g18860.1 View Network Show in Genome Browser
Other Names	Os01g0293000
Description	S-adenosylmethionine synthetase, putative, expressed
Gene Attributes	Chromosome: Chr1 CDS Coordinates (5'-3'): 10657463-10659756 Nucleotide Length: 1191
Protein-coding	LOC_Os01g18860

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005618	cell wall	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g18050 LOC_Os01g16960 LOC_Os01g11300 LOC_Os01g16900 LOC_Os01g16240 LOC_Os01g11340 LOC_Os01g08770 LOC_Os01g17190 LOC_Os01g11270 LOC_Os01g11280 LOC_Os01g04730 More..
Downstream Genes	LOC_Os02g01920 LOC_Os02g32490 LOC_Os04g17064 LOC_Os11g26850 LOC_Os03g12900 LOC_Os12g07300 LOC_Os08g12820 LOC_Os05g04510 LOC_Os01g22010 LOC_Os03g08440 LOC_Os07g42450 More..

miRNA Regulations
miRNAs	osa-miR5528

Pathways
KEGG Pathways	rn00270 rn01100 rn01110
Metacyc Pathways	PWY-5041 ETHYL-PWY SAM-PWY PWY-4361 METHIONINE-DEG1-PWY

Database Links
Gramene	LOC_Os01g18860.1
Rice Genome Annotation	LOC_Os01g18860.1
Ricechip	LOC_Os01g18860.1
KEGG	osa:4325163 dosa:Os01t0293000-01
Entrez-Gene	4325163