RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g21420.1 View Network Show in Genome Browser |
| Other Names | Os01g0316600,Os01g0316550 |
| Description | pre-mRNA-splicing factor SF2, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 11957243-11964812 Nucleotide Length: 879 |
| Protein-coding | LOC_Os01g21420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os06g02620 LOC_Os02g40900 LOC_Os04g48030 LOC_Os11g41820 LOC_Os03g23980 LOC_Os05g48960 LOC_Os09g35790 LOC_Os10g06130 LOC_Os08g37960 LOC_Os02g58090 LOC_Os04g39444 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g21420.1 |
| Rice Genome Annotation | LOC_Os01g21420.1 |
| Ricechip | LOC_Os01g21420.1 |
| KEGG | osa:4327263 dosa:Os01t0316600-01 |
| Entrez-Gene | 4327263 |