RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g21820.1 View Network Show in Genome Browser |
| Other Names | Os01g0321300 |
| Description | preprotein translocase subunit secA, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 12235262-12248213 Nucleotide Length: 3048 |
| Protein-coding | LOC_Os01g21820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11260 |
| Downstream Genes | LOC_Os03g17120 LOC_Os03g63950 LOC_Os02g38820 LOC_Os01g33230 LOC_Os04g56320 LOC_Os07g36250 LOC_Os05g31160 LOC_Os03g12320 LOC_Os07g46640 LOC_Os12g10200 LOC_Os01g25880 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1438 osa-miR2864.2 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g21820.1 |
| Rice Genome Annotation | LOC_Os01g21820.1 |
| Ricechip | LOC_Os01g21820.1 |
| KEGG | osa:4327279 dosa:Os01t0321300-00 |
| Entrez-Gene | 4327279 |