RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g22490.1 View Network Show in Genome Browser |
| Other Names | Os01g0328400 |
| Description | 40S ribosomal protein S27a, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 12645515-12646409 Nucleotide Length: 468 |
| Protein-coding | LOC_Os01g22490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g19840 LOC_Os01g10820 LOC_Os01g16890 LOC_Os01g04730 LOC_Os01g03070 LOC_Os01g16200 LOC_Os01g07260 LOC_Os01g12880 LOC_Os01g04910 |
| Downstream Genes | LOC_Os10g08930 LOC_Os04g28180 LOC_Os01g59990 LOC_Os11g11390 LOC_Os07g12250 LOC_Os03g14530 LOC_Os11g29190 LOC_Os03g22180 LOC_Os01g64090 LOC_Os05g40820 LOC_Os02g28810 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1437a |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g22490.1 |
| Rice Genome Annotation | LOC_Os01g22490.1 |
| Ricechip | LOC_Os01g22490.1 |
| KEGG | osa:4326977 dosa:Os01t0328400-01 |
| Entrez-Gene | 4326977 |