RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g25484.1 View Network Show in Genome Browser |
| Other Names | Os01g0357100 |
| Description | ferredoxin--nitrite reductase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 14446910-14453474 Nucleotide Length: 1884 |
| Protein-coding | LOC_Os01g25484 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os07g32570 LOC_Os03g57120 LOC_Os06g01850 LOC_Os02g01340 LOC_Os07g05400 LOC_Os01g53250 LOC_Os08g14570 LOC_Os09g38620 LOC_Os04g55960 LOC_Os01g44050 LOC_Os04g58140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00910 rn01120 |
| Metacyc Pathways | PWY-381 PWY490-3 |
| Reference | |
|---|---|
| PubMed | 16091467 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g25484.1 |
| Rice Genome Annotation | LOC_Os01g25484.1 |
| Ricechip | LOC_Os01g25484.1 |
| KEGG | osa:4326014 dosa:Os01t0357100-01 |
| Entrez-Gene | 4326014 |