RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g27520.1 View Network Show in Genome Browser |
| Other Names | Os01g0372700 |
| Description | tRNA synthetases class II domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 15356779-15360684 Nucleotide Length: 1680 |
| Protein-coding | LOC_Os01g27520 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g06020 LOC_Os01g04910 LOC_Os01g14830 LOC_Os01g08970 |
| Downstream Genes | LOC_Os03g38980 LOC_Os02g53680 LOC_Os02g42230 LOC_Os03g24170 LOC_Os07g31140 LOC_Os04g48750 LOC_Os07g46490 LOC_Os01g54870 LOC_Os03g24160 LOC_Os08g09350 LOC_Os12g04700 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g27520.1 |
| Rice Genome Annotation | LOC_Os01g27520.1 |
| Ricechip | LOC_Os01g27520.1 |
| KEGG | osa:4325717 dosa:Os01t0372700-01 |
| Entrez-Gene | 4325717 |