RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g39260.1 View Network Show in Genome Browser |
| Other Names | Os01g0574500 |
| Description | OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22082256-22088383 Nucleotide Length: 2148 |
| Protein-coding | LOC_Os01g39260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g39250 LOC_Os01g04840 LOC_Os01g38970 LOC_Os01g16910 LOC_Os01g16930 |
| Downstream Genes | LOC_Os07g42632 LOC_Os09g27270 LOC_Os03g60750 LOC_Os06g49140 LOC_Os05g49230 LOC_Os02g16670 LOC_Os10g36860 LOC_Os05g38400 LOC_Os07g09720 LOC_Os08g16480 LOC_Os06g06190 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2106 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g39260.1 |
| Rice Genome Annotation | LOC_Os01g39260.1 |
| Ricechip | LOC_Os01g39260.1 |
| KEGG | osa:4326311 dosa:Os01t0574500-01 |
| Entrez-Gene | 4326311 |