RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g39270.1 View Network Show in Genome Browser |
| Other Names | Os01g0574600 |
| Description | NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22088204-22091020 Nucleotide Length: 1026 |
| Protein-coding | LOC_Os01g39270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g12830 LOC_Os01g07500 |
| Downstream Genes | LOC_Os02g38240 LOC_Os03g55930 LOC_Os03g03020 LOC_Os12g25690 LOC_Os01g71280 LOC_Os07g12640 LOC_Os01g74000 LOC_Os07g37830 LOC_Os01g58380 LOC_Os02g17390 LOC_Os12g25700 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00280 rn01100 rn00030 rn00480 rn01110 rn01120 |
| Metacyc Pathways | VALDEG-PWY OXIDATIVEPENT-PWY RUMP-PWY P122-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g39270.1 |
| Rice Genome Annotation | LOC_Os01g39270.1 |
| Ricechip | LOC_Os01g39270.1 |
| KEGG | osa:4326312 dosa:Os01t0574600-01 |
| Entrez-Gene | 4326312 |