RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g39280.1 View Network Show in Genome Browser |
| Other Names | |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22091548-22091889 Nucleotide Length: 342 |
| Protein-coding | LOC_Os01g39280 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g35170 |
| Downstream Genes | LOC_Os02g03740 LOC_Os10g08220 LOC_Os05g44350 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00051 rn00562 rn00710 rn01100 rn01110 rn01120 |
| Metacyc Pathways | ANAEROFRUCAT-PWY PWY-1042 CALVIN-PWY PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g39280.1 |
| Rice Genome Annotation | LOC_Os01g39280.1 |
| Ricechip | LOC_Os01g39280.1 |