RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g39330.1 View Network Show in Genome Browser |
| Other Names | Os01g0575200 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22138043-22142486 Nucleotide Length: 1365 |
| Protein-coding | LOC_Os01g39330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g06460 |
| Downstream Genes | LOC_Os06g18000 LOC_Os12g36110 LOC_Os07g31460 LOC_Os07g49080 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g39330.1 |
| Rice Genome Annotation | LOC_Os01g39330.1 |
| Ricechip | LOC_Os01g39330.1 |
| KEGG | osa:4326315 dosa:Os01t0575200-01 |
| Entrez-Gene | 4326315 |