RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g39830.1 View Network Show in Genome Browser |
| Other Names | Os01g0580200 |
| Description | beta-galactosidase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22466546-22472589 Nucleotide Length: 2484 |
| Protein-coding | LOC_Os01g39830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g05080 LOC_Os01g04710 LOC_Os01g25560 LOC_Os01g06580 LOC_Os01g28540 LOC_Os01g18240 LOC_Os01g11710 LOC_Os01g12200 LOC_Os01g33160 |
| Downstream Genes | LOC_Os11g27264 LOC_Os12g07160 LOC_Os11g27329 LOC_Os10g01110 LOC_Os04g09720 LOC_Os12g29760 LOC_Os01g68480 LOC_Os06g42800 LOC_Os01g71474 LOC_Os11g26190 LOC_Os07g38590 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00052 rn00531 rn00604 rn01100 rn00511 rn00600 |
| Metacyc Pathways | LACTOSEUTIL-PWY BGALACT-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g39830.1 |
| Rice Genome Annotation | LOC_Os01g39830.1 |
| Ricechip | LOC_Os01g39830.1 |
| KEGG | osa:4324191 dosa:Os01t0580200-01 |
| Entrez-Gene | 4324191 |