RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g40170.1 View Network Show in Genome Browser |
| Other Names | Os01g0583900 |
| Description | translation initiation factor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22656369-22664571 Nucleotide Length: 2994 |
| Protein-coding | LOC_Os01g40170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g33050 LOC_Os01g10820 LOC_Os01g39630 LOC_Os01g25610 LOC_Os01g36390 LOC_Os01g17330 |
| Downstream Genes | LOC_Os06g04610 LOC_Os05g01750 LOC_Os07g44190 LOC_Os04g48700 LOC_Os03g25450 LOC_Os11g38600 LOC_Os02g55940 LOC_Os06g07896 LOC_Os07g07310 LOC_Os02g40460 LOC_Os12g34550 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g40170.1 |
| Rice Genome Annotation | LOC_Os01g40170.1 |
| Ricechip | LOC_Os01g40170.1 |
| KEGG | dosa:Os01t0583900-00 |