RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g40340.3 View Network Show in Genome Browser |
| Other Names | Os01g0585700 |
| Description | SIT4 phosphatase-associated protein domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22776946-22782787 Nucleotide Length: 1422 |
| Protein-coding | LOC_Os01g40340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g13730 LOC_Os01g38970 LOC_Os01g38950 LOC_Os01g28500 LOC_Os01g25240 LOC_Os01g10820 LOC_Os01g08780 LOC_Os01g08770 LOC_Os01g10050 |
| Downstream Genes | LOC_Os01g49690 LOC_Os10g25110 LOC_Os06g01980 LOC_Os07g10350 LOC_Os04g52200 LOC_Os05g51490 LOC_Os05g22920 LOC_Os02g50370 LOC_Os05g05450 LOC_Os03g52470 LOC_Os06g40120 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1424 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g40340.3 |
| Rice Genome Annotation | LOC_Os01g40340.3 |
| Ricechip | LOC_Os01g40340.3 |
| KEGG | osa:4327657 dosa:Os01t0585700-01 |
| Entrez-Gene | 4327657 |