RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os01g40470.1 View Network Show in Genome Browser
Other Names	Os01g0587000
Description	vacuolar ATP synthase subunit d, putative, expressed
Gene Attributes	Chromosome: Chr1 CDS Coordinates (5'-3'): 22855458-22859753 Nucleotide Length: 1056
Protein-coding	LOC_Os01g40470

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0005215	transporter activity	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005773	vacuole	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g12260 LOC_Os01g18860 LOC_Os01g22010 LOC_Os01g38670 LOC_Os01g18050 LOC_Os01g38680 LOC_Os01g09320 LOC_Os01g32800 LOC_Os01g20160
Downstream Genes	LOC_Os10g10500 LOC_Os03g14690 LOC_Os09g32800 LOC_Os08g41730 LOC_Os01g61780 LOC_Os06g37180 LOC_Os06g45120 LOC_Os02g57854 LOC_Os01g51380 LOC_Os02g07870 LOC_Os05g33050 More..

Pathways
KEGG Pathways	rn01100 rn00680 rn00190 rn00195
Metacyc Pathways	PWY-6126

Database Links
Gramene	LOC_Os01g40470.1
Rice Genome Annotation	LOC_Os01g40470.1
Ricechip	LOC_Os01g40470.1
KEGG	osa:4327660 dosa:Os01t0587000-01
Entrez-Gene	4327660