RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g40680.1 View Network Show in Genome Browser |
| Other Names | Os01g0589400 |
| Description | pentatricopeptide, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22992552-22994171 Nucleotide Length: 1620 |
| Protein-coding | LOC_Os01g40680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g40670 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00592 rn01100 rn00564 |
| Metacyc Pathways | PWY-735 LIPASYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g40680.1 |
| Rice Genome Annotation | LOC_Os01g40680.1 |
| Ricechip | LOC_Os01g40680.1 |
| KEGG | osa:4324450 dosa:Os01t0589400-01 |
| Entrez-Gene | 4324450 |