RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g40860.1 View Network Show in Genome Browser |
| Other Names | Os01g0591000 |
| Description | aldehyde dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 23097256-23106303 Nucleotide Length: 1509 |
| Protein-coding | LOC_Os01g40860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g22520 LOC_Os01g38510 LOC_Os01g25386 LOC_Os01g40470 |
| Downstream Genes | LOC_Os05g03620 LOC_Os03g01180 LOC_Os07g08430 LOC_Os02g08180 LOC_Os09g04339 LOC_Os07g12890 LOC_Os11g37920 LOC_Os05g04170 LOC_Os04g58090 LOC_Os01g74650 LOC_Os03g16950 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00940 |
| Metacyc Pathways | PWY0-1280 PWY-4561 AST-PWY PROUT-PWY ARGASEDEG-PWY HYDROXYPRODEG-PWY |
| Reference | |
|---|---|
| PubMed | 19071198 20634950 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g40860.1 |
| Rice Genome Annotation | LOC_Os01g40860.1 |
| Ricechip | LOC_Os01g40860.1 |
| KEGG | osa:4326375 dosa:Os01t0591000-01 |
| Entrez-Gene | 4326375 |