RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g42040.1 View Network Show in Genome Browser |
| Other Names | Os01g0605300 |
| Description | ubiquitin-conjugating enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 23840853-23843547 Nucleotide Length: 1671 |
| Protein-coding | LOC_Os01g42040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g16650 LOC_Os01g36390 LOC_Os01g33080 LOC_Os01g14610 |
| Downstream Genes | LOC_Os02g03060 LOC_Os10g30640 LOC_Os02g10020 LOC_Os07g32480 LOC_Os02g47150 LOC_Os04g40940 LOC_Os03g49200 LOC_Os03g05300 LOC_Os07g32390 LOC_Os05g46270 LOC_Os12g39210 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2905 osa-miR1847.2 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g42040.1 |
| Rice Genome Annotation | LOC_Os01g42040.1 |
| Ricechip | LOC_Os01g42040.1 |
| KEGG | osa:4324209 dosa:Os01t0605300-01 |
| Entrez-Gene | 4324209 |