RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g42060.1 View Network Show in Genome Browser |
| Other Names | Os01g0605400 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 23847041-23850326 Nucleotide Length: 1908 |
| Protein-coding | LOC_Os01g42060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g13730 |
| Downstream Genes | LOC_Os02g08190 LOC_Os12g42150 LOC_Os02g18820 LOC_Os06g02160 LOC_Os02g13110 LOC_Os05g14170 LOC_Os10g26140 LOC_Os08g41270 LOC_Os08g21660 LOC_Os10g30620 LOC_Os03g14980 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5144-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g42060.1 |
| Rice Genome Annotation | LOC_Os01g42060.1 |
| Ricechip | LOC_Os01g42060.1 |
| KEGG | osa:4324210 dosa:Os01t0605400-00 |
| Entrez-Gene | 4324210 |