RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g42960.1 View Network Show in Genome Browser |
| Other Names | Os01g0616333,Os01g0616300 |
| Description | TTL1, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 24461037-24465044 Nucleotide Length: 2079 |
| Protein-coding | LOC_Os01g42960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os06g41750 LOC_Os06g11320 LOC_Os08g44510 LOC_Os03g15740 LOC_Os07g27180 LOC_Os10g32300 LOC_Os09g36740 LOC_Os07g49000 LOC_Os07g06710 LOC_Os03g22140 LOC_Os03g19200 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g42960.1 |
| Rice Genome Annotation | LOC_Os01g42960.1 |
| Ricechip | LOC_Os01g42960.1 |
| KEGG | osa:4326651 dosa:Os01t0616333-01dosa:Os01t0616300-01 |
| Entrez-Gene | 9269276 |