RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g43170.2 View Network Show in Genome Browser |
| Other Names | Os01g0619000 |
| Description | polypyrimidine tract-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 24633744-24639276 Nucleotide Length: 1347 |
| Protein-coding | LOC_Os01g43170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g36570 LOC_Os01g34614 LOC_Os01g15860 LOC_Os01g21420 LOC_Os01g22010 |
| Downstream Genes | LOC_Os07g07220 LOC_Os01g72890 LOC_Os06g40600 LOC_Os08g37960 LOC_Os10g06130 LOC_Os04g58640 LOC_Os02g39720 LOC_Os03g18720 LOC_Os02g01740 LOC_Os05g24970 LOC_Os01g59140 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g43170.2 |
| Rice Genome Annotation | LOC_Os01g43170.2 |
| Ricechip | LOC_Os01g43170.2 |
| KEGG | osa:4326619 dosa:Os01t0619000-02 |
| Entrez-Gene | 4326619 |