RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g47540.3 View Network Show in Genome Browser |
| Other Names | Os01g0665300 |
| Description | NLI interacting factor-like phosphatase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 27178685-27183842 Nucleotide Length: 1263 |
| Protein-coding | LOC_Os01g47540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43030 LOC_Os01g32880 |
| Downstream Genes | LOC_Os08g36420 LOC_Os02g37000 LOC_Os05g32430 LOC_Os09g33986 LOC_Os03g24600 LOC_Os03g47780 LOC_Os04g38900 LOC_Os07g49150 LOC_Os03g34300 LOC_Os03g18690 LOC_Os07g10690 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g47540.3 |
| Rice Genome Annotation | LOC_Os01g47540.3 |
| Ricechip | LOC_Os01g47540.3 |
| KEGG | osa:4326854 dosa:Os01t0665300-02 |
| Entrez-Gene | 4326854 |