RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g47600.1 View Network Show in Genome Browser |
| Other Names | Os01g0666200 |
| Description | HMG1/2, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 27236509-27239919 Nucleotide Length: 402 |
| Protein-coding | LOC_Os01g47600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g27040 LOC_Os01g05900 LOC_Os01g05630 LOC_Os01g05610 LOC_Os01g06010 LOC_Os01g05970 LOC_Os01g38970 LOC_Os01g46380 LOC_Os01g08970 LOC_Os01g32750 LOC_Os01g10820 More.. |
| Downstream Genes | LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 LOC_Os03g51200 LOC_Os12g25120 LOC_Os07g36130 LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os07g36500 LOC_Os05g39050 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g47600.1 |
| Rice Genome Annotation | LOC_Os01g47600.1 |
| Ricechip | LOC_Os01g47600.1 |
| KEGG | osa:4326858 dosa:Os01t0666200-01 |
| Entrez-Gene | 4326858 |