RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g48210.2 View Network Show in Genome Browser |
| Other Names | Os01g0672700 |
| Description | PAP/25A associated domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 27624620-27630342 Nucleotide Length: 879 |
| Protein-coding | LOC_Os01g48210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08770 LOC_Os01g13730 LOC_Os01g22990 LOC_Os01g33030 LOC_Os01g34200 LOC_Os01g47256 LOC_Os01g10050 LOC_Os01g07080 LOC_Os01g01960 |
| Downstream Genes | LOC_Os03g40110 LOC_Os07g33340 LOC_Os04g58830 LOC_Os06g21470 LOC_Os03g22350 LOC_Os12g31840 LOC_Os02g26850 LOC_Os05g49230 LOC_Os09g30210 LOC_Os01g68310 LOC_Os01g69970 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2923 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g48210.2 |
| Rice Genome Annotation | LOC_Os01g48210.2 |
| Ricechip | LOC_Os01g48210.2 |
| KEGG | osa:4325901 dosa:Os01t0672700-02 |
| Entrez-Gene | 4325901 |