RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g48680.1 View Network Show in Genome Browser |
| Other Names | Os01g0678500 |
| Description | two pore calcium channel protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 27906608-27920980 Nucleotide Length: 2274 |
| Protein-coding | LOC_Os01g48680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g45990 LOC_Os01g43410 LOC_Os01g41420 LOC_Os01g41400 LOC_Os01g40410 LOC_Os01g05510 LOC_Os01g18050 LOC_Os01g11250 LOC_Os01g08780 LOC_Os01g21070 |
| Downstream Genes | LOC_Os01g59360 LOC_Os06g33570 LOC_Os05g41270 LOC_Os02g14840 LOC_Os02g53340 LOC_Os05g35410 LOC_Os04g55080 LOC_Os12g28260 LOC_Os06g08850 LOC_Os12g06570 LOC_Os02g41710 More.. |
| Reference | |
|---|---|
| PubMed | 15111725 15941394 15215504 22270358 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g48680.1 |
| Rice Genome Annotation | LOC_Os01g48680.1 |
| Ricechip | LOC_Os01g48680.1 |
| KEGG | osa:4325272 dosa:Os01t0678500-01 |
| Entrez-Gene | 4325272 |