RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g48690.2 View Network Show in Genome Browser |
| Other Names | Os01g0678600 |
| Description | ribosomal protein rpS20, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 27922318-27924368 Nucleotide Length: 456 |
| Protein-coding | LOC_Os01g48690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g39270 LOC_Os01g32870 LOC_Os01g33800 LOC_Os01g03020 LOC_Os01g33360 LOC_Os01g07500 LOC_Os01g40710 LOC_Os01g17030 LOC_Os01g08560 LOC_Os01g01302 |
| Downstream Genes | LOC_Os01g59060 LOC_Os03g10060 LOC_Os05g09400 LOC_Os03g03360 LOC_Os01g54540 LOC_Os09g10760 LOC_Os03g15870 LOC_Os03g55930 LOC_Os05g27100 LOC_Os02g15900 LOC_Os03g03020 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g48690.2 |
| Rice Genome Annotation | LOC_Os01g48690.2 |
| Ricechip | LOC_Os01g48690.2 |
| KEGG | osa:4325273 dosa:Os01t0678600-01 |
| Entrez-Gene | 4325273 |