RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g48810.1 View Network Show in Genome Browser |
| Other Names | Os01g0680400 |
| Description | transcription initiation factor TFIID subunit 11, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 28009026-28011895 Nucleotide Length: 636 |
| Protein-coding | LOC_Os01g48810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g23630 LOC_Os01g32750 LOC_Os01g46020 LOC_Os01g34614 |
| Downstream Genes | LOC_Os03g45410 LOC_Os06g44030 LOC_Os12g39070 LOC_Os05g28010 LOC_Os06g43790 LOC_Os09g26180 LOC_Os02g02510 LOC_Os01g63940 LOC_Os04g58350 LOC_Os05g43450 LOC_Os05g05860 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g48810.1 |
| Rice Genome Annotation | LOC_Os01g48810.1 |
| Ricechip | LOC_Os01g48810.1 |
| KEGG | osa:4325286 dosa:Os01t0680400-01 |
| Entrez-Gene | 4325286 |