RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os01g49000.1 View Network Show in Genome Browser
Other Names	Os01g0683100
Description	katanin p60 ATPase-containing subunit, putative, expressed
Gene Attributes	Chromosome: Chr1 CDS Coordinates (5'-3'): 28136367-28143360 Nucleotide Length: 1560
Protein-coding	LOC_Os01g49000

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005856	cytoskeleton	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g18050 LOC_Os01g16540 LOC_Os01g21860 LOC_Os01g16190 LOC_Os01g04910 LOC_Os01g22010 LOC_Os01g18860
Downstream Genes	LOC_Os02g47410 LOC_Os02g51180 LOC_Os04g51370 LOC_Os04g55030 LOC_Os08g07400 LOC_Os04g42840 LOC_Os02g57120 LOC_Os02g40430 LOC_Os05g51130 LOC_Os03g56810 LOC_Os09g25314 More..

miRNA Regulations
miRNAs	osa-miR2863b

Reference
PubMed	16040652

Database Links
Gramene	LOC_Os01g49000.1
Rice Genome Annotation	LOC_Os01g49000.1
Ricechip	LOC_Os01g49000.1
KEGG	osa:4324404 dosa:Os01t0683100-01
Entrez-Gene	4324404