RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g49180.1 View Network Show in Genome Browser |
| Other Names | Os01g0685500 |
| Description | ATP dependent DNA ligase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 28261415-28273067 Nucleotide Length: 4368 |
| Protein-coding | LOC_Os01g49180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os03g03560 LOC_Os02g18840 LOC_Os09g26760 LOC_Os07g32412 LOC_Os07g38610 LOC_Os04g14410 LOC_Os03g63590 LOC_Os10g02620 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g49180.1 |
| Rice Genome Annotation | LOC_Os01g49180.1 |
| Ricechip | LOC_Os01g49180.1 |
| KEGG | osa:4324149 dosa:Os01t0685500-01 |
| Entrez-Gene | 4324149 |