RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g49330.1 View Network Show in Genome Browser |
| Other Names | Os01g0687500 |
| Description | formyl transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 28364038-28368313 Nucleotide Length: 1089 |
| Protein-coding | LOC_Os01g49330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g45070 LOC_Os01g44980 LOC_Os01g37510 LOC_Os01g26210 LOC_Os01g04550 LOC_Os01g04570 LOC_Os01g26300 LOC_Os01g04460 LOC_Os01g12290 LOC_Os01g26280 LOC_Os01g44110 More.. |
| Downstream Genes | LOC_Os09g30100 LOC_Os02g53430 LOC_Os02g21510 LOC_Os08g37780 LOC_Os09g29630 LOC_Os09g32810 LOC_Os03g20460 LOC_Os12g33100 LOC_Os06g09910 LOC_Os05g04460 LOC_Os02g12600 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00630 rn00670 rn00970 |
| Metacyc Pathways | 1CMET2-PWY PWY-2201 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g49330.1 |
| Rice Genome Annotation | LOC_Os01g49330.1 |
| Ricechip | LOC_Os01g49330.1 |
| KEGG | osa:4324118 dosa:Os01t0687500-01 |
| Entrez-Gene | 4324118 |