RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g50030.1 View Network Show in Genome Browser |
| Other Names | Os01g0695100 |
| Description | CPuORF25 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 28739987-28744762 Nucleotide Length: 1500 |
| Protein-coding | LOC_Os01g50030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g40660 LOC_Os01g22010 LOC_Os01g18860 LOC_Os01g19470 LOC_Os01g21610 LOC_Os01g49190 LOC_Os01g16910 LOC_Os01g05694 LOC_Os01g01080 LOC_Os01g46980 LOC_Os01g24030 More.. |
| Downstream Genes | LOC_Os11g26850 LOC_Os12g41250 LOC_Os12g43630 LOC_Os11g20790 LOC_Os03g51600 LOC_Os03g17000 LOC_Os12g13380 LOC_Os11g09280 LOC_Os02g01010 LOC_Os11g14220 LOC_Os09g08910 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-4942 PWY0-541 PWY-3385 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g50030.1 |
| Rice Genome Annotation | LOC_Os01g50030.1 |
| Ricechip | LOC_Os01g50030.1 |
| KEGG | dosa:Os01t0695100-01 |
| Entrez-Gene | 4323890 |