RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g51120.1 View Network Show in Genome Browser |
| Other Names | Os01g0707300 |
| Description | vesicle transport v-SNARE protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 29364527-29368029 Nucleotide Length: 666 |
| Protein-coding | LOC_Os01g51120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0004872 | receptor activity | Molecular Function | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g12800 LOC_Os01g47650 LOC_Os01g14830 LOC_Os01g05694 LOC_Os01g13350 LOC_Os01g50030 LOC_Os01g04840 LOC_Os01g21610 LOC_Os01g08770 |
| Downstream Genes | LOC_Os03g49220 LOC_Os04g56646 LOC_Os02g03450 LOC_Os08g34140 LOC_Os08g18110 LOC_Os04g51120 LOC_Os02g02720 LOC_Os08g17600 LOC_Os03g07840 LOC_Os01g64650 LOC_Os09g24980 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g51120.1 |
| Rice Genome Annotation | LOC_Os01g51120.1 |
| Ricechip | LOC_Os01g51120.1 |
| KEGG | osa:4327678 dosa:Os01t0707300-01 |
| Entrez-Gene | 4327678 |