RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g51450.1 View Network Show in Genome Browser |
| Other Names | Os01g0711800 |
| Description | NAP domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 29580715-29583174 Nucleotide Length: 906 |
| Protein-coding | LOC_Os01g51450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g10840 LOC_Os01g08970 LOC_Os01g05900 LOC_Os01g05630 LOC_Os01g05610 LOC_Os01g14860 LOC_Os01g06010 LOC_Os01g05970 LOC_Os01g19150 LOC_Os01g05050 LOC_Os01g08760 More.. |
| Downstream Genes | LOC_Os03g53190 LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 LOC_Os05g11730 LOC_Os01g62230 LOC_Os03g06670 LOC_Os03g18570 LOC_Os03g18580 LOC_Os04g25550 LOC_Os10g28230 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g51450.1 |
| Rice Genome Annotation | LOC_Os01g51450.1 |
| Ricechip | LOC_Os01g51450.1 |
| KEGG | osa:9269473 dosa:Os01t0711800-00 |
| Entrez-Gene | 9269473 |