RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g51890.1 View Network Show in Genome Browser |
| Other Names | Os01g0716800 |
| Description | endonuclease/exonuclease/phosphatase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 29830122-29836238 Nucleotide Length: 2031 |
| Protein-coding | LOC_Os01g51890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48680 LOC_Os01g42490 LOC_Os01g33080 LOC_Os01g08780 |
| Downstream Genes | LOC_Os06g15410 LOC_Os12g22620 LOC_Os12g18200 LOC_Os11g20384 LOC_Os02g34884 LOC_Os03g07080 LOC_Os10g27230 LOC_Os05g32330 LOC_Os10g26164 LOC_Os06g13000 LOC_Os06g51250 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g51890.1 |
| Rice Genome Annotation | LOC_Os01g51890.1 |
| Ricechip | LOC_Os01g51890.1 |
| KEGG | osa:4325585 dosa:Os01t0716800-01 |
| Entrez-Gene | 4325585 |