RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g52400.1 View Network Show in Genome Browser |
| Other Names | Os01g0722100 |
| Description | bacterial transferase hexapeptide domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 30102785-30107361 Nucleotide Length: 984 |
| Protein-coding | LOC_Os01g52400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g18070 |
| Downstream Genes | LOC_Os08g12840 LOC_Os05g36000 LOC_Os01g54900 LOC_Os01g63830 LOC_Os02g10260 LOC_Os03g38230 LOC_Os07g04200 LOC_Os04g41300 LOC_Os12g07220 LOC_Os02g30460 LOC_Os06g23160 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2094-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00540 rn01100 |
| Metacyc Pathways | NAGLIPASYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g52400.1 |
| Rice Genome Annotation | LOC_Os01g52400.1 |
| Ricechip | LOC_Os01g52400.1 |
| KEGG | osa:4324662 dosa:Os01t0722100-01 |
| Entrez-Gene | 4324662 |