RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g52640.3 View Network Show in Genome Browser |
| Other Names | Os01g0725800 |
| Description | suppressor of phythchrome A, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 30257752-30263989 Nucleotide Length: 1887 |
| Protein-coding | LOC_Os01g52640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0004871 | signal transducer activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g07700 |
| Downstream Genes | LOC_Os06g16370 LOC_Os05g44320 LOC_Os02g42590 LOC_Os08g04270 LOC_Os03g52794 LOC_Os02g19210 LOC_Os09g39420 LOC_Os07g12320 LOC_Os11g08400 LOC_Os09g06680 LOC_Os12g07874 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396a-5p osa-miR396b-5p osa-miR396c-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g52640.3 |
| Rice Genome Annotation | LOC_Os01g52640.3 |
| Ricechip | LOC_Os01g52640.3 |
| KEGG | osa:4324727 dosa:Os01t0725800-01 |
| Entrez-Gene | 4324727 |