RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g53350.1 View Network Show in Genome Browser |
| Other Names | Os01g0734800 |
| Description | anthocyanidin 5,3-O-glucosyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 30655289-30657179 Nucleotide Length: 1437 |
| Protein-coding | LOC_Os01g53350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g50490 LOC_Os01g27890 LOC_Os01g25610 LOC_Os01g12770 LOC_Os01g12760 LOC_Os01g12740 LOC_Os01g12750 LOC_Os01g39630 LOC_Os01g38110 LOC_Os01g52160 LOC_Os01g03490 More.. |
| Downstream Genes | LOC_Os02g40030 LOC_Os10g16974 LOC_Os09g26940 LOC_Os09g08990 LOC_Os02g36190 LOC_Os02g32770 LOC_Os02g36150 LOC_Os03g56800 LOC_Os07g11870 LOC_Os07g11970 LOC_Os09g26960 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5504 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00908 |
| Metacyc Pathways | PWY-2902 PWY-2881 PWY-2901 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g53350.1 |
| Rice Genome Annotation | LOC_Os01g53350.1 |
| Ricechip | LOC_Os01g53350.1 |
| KEGG | osa:4324166 dosa:Os01t0734800-01 |
| Entrez-Gene | 4324166 |