RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g53890.1 View Network Show in Genome Browser |
| Other Names | Os01g0742000 |
| Description | RNA methyltransferase, TrmH family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 30984518-30986791 Nucleotide Length: 1554 |
| Protein-coding | LOC_Os01g53890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47330 LOC_Os01g51200 LOC_Os01g42980 LOC_Os01g39630 LOC_Os01g52260 LOC_Os01g17430 LOC_Os01g07590 LOC_Os01g10820 LOC_Os01g38950 LOC_Os01g14830 LOC_Os01g40250 More.. |
| Downstream Genes | LOC_Os11g13420 LOC_Os05g25400 LOC_Os02g51780 LOC_Os08g39600 LOC_Os03g01110 LOC_Os07g10250 LOC_Os03g59050 LOC_Os11g38670 LOC_Os03g03710 LOC_Os02g57070 LOC_Os01g54580 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g53890.1 |
| Rice Genome Annotation | LOC_Os01g53890.1 |
| Ricechip | LOC_Os01g53890.1 |
| KEGG | osa:4326542 dosa:Os01t0742000-01 |
| Entrez-Gene | 4326542 |