RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g53930.1 View Network Show in Genome Browser |
| Other Names | Os01g0742500 |
| Description | hexokinase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31009006-31014001 Nucleotide Length: 1521 |
| Protein-coding | LOC_Os01g53930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g09460 LOC_Os01g44130 LOC_Os01g47410 LOC_Os01g40570 LOC_Os01g52450 LOC_Os01g51770 LOC_Os01g38670 LOC_Os01g38680 LOC_Os01g12800 |
| Downstream Genes | LOC_Os10g11140 LOC_Os09g38030 LOC_Os01g74000 LOC_Os02g02560 LOC_Os08g42730 LOC_Os06g14510 LOC_Os03g56460 LOC_Os05g44210 LOC_Os02g48110 LOC_Os11g42160 LOC_Os05g51550 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275c |
| Pathways | |
|---|---|
| KEGG Pathways | rn00521 rn00524 rn01110 rn00520 rn00051 rn00052 rn00010 rn01100 rn01120 rn00500 |
| Metacyc Pathways | P124-PWY PWY-6693 PWY-6531 PWY-842 PWY-621 P122-PWY SUCUTIL-PWY PWY-5384 PWY-3801 MANGDPMET-PWY MANNCAT-PWY |
| Reference | |
|---|---|
| PubMed | 19010999 16552590 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g53930.1 |
| Rice Genome Annotation | LOC_Os01g53930.1 |
| Ricechip | LOC_Os01g53930.1 |
| KEGG | osa:4326547 dosa:Os01t0742500-01 |
| Entrez-Gene | 4326547 |