RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g54020.2 View Network Show in Genome Browser |
| Other Names | Os01g0743400 |
| Description | tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31070191-31076279 Nucleotide Length: 1182 |
| Protein-coding | LOC_Os01g54020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g31610 LOC_Os01g08770 LOC_Os01g03020 LOC_Os01g09000 LOC_Os01g06510 |
| Downstream Genes | LOC_Os08g05490 LOC_Os08g23110 LOC_Os05g06330 LOC_Os09g32650 LOC_Os03g48850 LOC_Os06g47940 LOC_Os12g07700 LOC_Os08g07060 LOC_Os11g07916 LOC_Os02g53770 LOC_Os02g55120 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g54020.2 |
| Rice Genome Annotation | LOC_Os01g54020.2 |
| Ricechip | LOC_Os01g54020.2 |
| KEGG | osa:4326551 dosa:Os01t0743400-02 |
| Entrez-Gene | 4326551 |