RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g54040.1 View Network Show in Genome Browser |
| Other Names | Os01g0743600 |
| Description | ATP-dependent protease La, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31078609-31088007 Nucleotide Length: 1608 |
| Protein-coding | LOC_Os01g54040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g32350 LOC_Os01g16530 |
| Downstream Genes | LOC_Os02g19150 LOC_Os02g35630 LOC_Os01g66330 LOC_Os05g45750 LOC_Os02g42290 LOC_Os04g44400 LOC_Os03g19510 LOC_Os12g10590 LOC_Os08g15270 LOC_Os03g22430 LOC_Os06g04530 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-3p osa-miR5837.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g54040.1 |
| Rice Genome Annotation | LOC_Os01g54040.1 |
| Ricechip | LOC_Os01g54040.1 |
| KEGG | osa:4326165 dosa:Os01t0743600-01 |
| Entrez-Gene | 4326165 |