RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g54390.1 View Network Show in Genome Browser |
| Other Names | Os01g0747700 |
| Description | S4 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31288170-31292795 Nucleotide Length: 918 |
| Protein-coding | LOC_Os01g54390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g31610 |
| Downstream Genes | LOC_Os04g56670 LOC_Os11g14230 LOC_Os11g38959 LOC_Os03g05980 LOC_Os03g05806 LOC_Os02g53770 LOC_Os05g37160 LOC_Os04g56970 LOC_Os03g44420 LOC_Os03g08080 LOC_Os06g30380 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g54390.1 |
| Rice Genome Annotation | LOC_Os01g54390.1 |
| Ricechip | LOC_Os01g54390.1 |
| KEGG | osa:4325544 dosa:Os01t0747700-01 |
| Entrez-Gene | 4325544 |