RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g54540.2 View Network Show in Genome Browser |
| Other Names | Os01g0749200 |
| Description | ribosomal protein L13, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31367015-31369416 Nucleotide Length: 687 |
| Protein-coding | LOC_Os01g54540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48690 LOC_Os01g34614 LOC_Os01g14830 LOC_Os01g40250 LOC_Os01g27730 LOC_Os01g21180 LOC_Os01g49720 LOC_Os01g42640 LOC_Os01g39270 LOC_Os01g49710 LOC_Os01g49250 More.. |
| Downstream Genes | LOC_Os03g03360 LOC_Os03g55930 LOC_Os12g03090 LOC_Os11g03400 LOC_Os07g46440 LOC_Os01g59060 LOC_Os03g03020 LOC_Os03g10060 LOC_Os09g10760 LOC_Os03g62630 LOC_Os03g15870 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g54540.2 |
| Rice Genome Annotation | LOC_Os01g54540.2 |
| Ricechip | LOC_Os01g54540.2 |
| KEGG | osa:4325555 dosa:Os01t0749200-01 |
| Entrez-Gene | 4325555 |