RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g54620.1 View Network Show in Genome Browser |
| Other Names | Os01g0750300 |
| Description | CESA4 - cellulose synthase, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31422946-31428688 Nucleotide Length: 2970 |
| Protein-coding | LOC_Os01g54620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48130 |
| Downstream Genes | LOC_Os09g25490 LOC_Os10g32980 LOC_Os07g27810 LOC_Os10g16974 LOC_Os07g06680 LOC_Os09g36350 LOC_Os06g11490 LOC_Os06g30950 LOC_Os05g48850 LOC_Os03g03164 LOC_Os03g60340 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 |
| Metacyc Pathways | PWY-1001 |
| Reference | |
|---|---|
| PubMed | 19697141 18037139 12970476 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g54620.1 |
| Rice Genome Annotation | LOC_Os01g54620.1 |
| Ricechip | LOC_Os01g54620.1 |
| KEGG | osa:4324625 dosa:Os01t0750300-01 |
| Entrez-Gene | 4324625 |