RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g54940.1 View Network Show in Genome Browser |
| Other Names | Os01g0753100 |
| Description | dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31599157-31604594 Nucleotide Length: 1098 |
| Protein-coding | LOC_Os01g54940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08970 LOC_Os01g53520 LOC_Os01g12650 |
| Downstream Genes | LOC_Os08g01760 LOC_Os10g07229 LOC_Os09g23540 LOC_Os03g08999 LOC_Os02g09490 LOC_Os02g42520 LOC_Os04g41960 LOC_Os01g66720 LOC_Os08g43190 LOC_Os11g10480 LOC_Os06g39040 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | THREONINE-DEG2-PWY THRDLCTCAT-PWY PWY-5448 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g54940.1 |
| Rice Genome Annotation | LOC_Os01g54940.1 |
| Ricechip | LOC_Os01g54940.1 |
| KEGG | osa:4327011 dosa:Os01t0753100-01 |
| Entrez-Gene | 4327011 |